ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2dfdC2 - ECOD Domain | ECOD

ECOD/Domains/e2dfdC2

e2dfdC2

UID: 000297601

PDB

Range: C:6-150
PDB: 2DFD chain C(all domains)
UniProt: P40926 (all domains)
Gene: MDH2

Molecule: Malate dehydrogenase

3D Structure

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Related Domains

Browse other domains in Ldh_1_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupNAD(P)-binding Rossmann-fold domains(2003.1.1)

FFamilyLdh_1_N(2003.1.1.2)

Ligands

in contact, ≤ 4 Å

NadideNAD
drugDrugBank DB14128
Chloride ionCL

+ 1 additive (D-Malic acid)

D-Malic acidMLT

Pfam Families

PF00056Ldh_1_N

lactate/malate dehydrogenase, NAD binding domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 2DFD RCSB PDB: 2DFD PDBe: 2DFD UniProt: P40926

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03499within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.