ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dc9A1 - ECOD Domain | ECOD

ECOD/Domains/e8dc9A1

e8dc9A1

UID: 002977537

PDB

Range: A:1-481
PDB: 8DC9 chain A(all domains)

Molecule: tRNA-splicing ligase RtcB

3D Structure

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Related Domains

Browse other domains in RtcB →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupHypothetical protein PH1602(304.106)

TT-groupHypothetical protein PH1602(304.106.1)

FFamilyRtcB(304.106.1.1)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Chloride ionCL
MANGANESE (II) IONMN

Pfam Families

tRNA-splicing ligase RtcB

External Links

ECOD PDB View: 8DC9 RCSB PDB: 8DC9 PDBe: 8DC9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.