ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7vm6U1 - ECOD Domain | ECOD

ECOD/Domains/e7vm6U1

e7vm6U1

UID: 002978897

PDB

Range: U:16-245
PDB: 7VM6 chain U(all domains)

Molecule: Urokinase-type plasminogen activator chain B

3D Structure

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Related Domains

Browse other domains in Trypsin →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel 2(1.1.17)

FFamilyTrypsin(1.1.17.1)

Ligands

in contact, ≤ 4 Å

6-oxidanylnaphthalene-2-carboximidamide7R8

+ 2 additives (Triethylene glycol, Sulfate ion)

Triethylene glycolPGE
DrugBank DB02327
Sulfate ionSO4

Pfam Families

PF00089Trypsin

Trypsin

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 7VM6 RCSB PDB: 7VM6 PDBe: 7VM6

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.