ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8a1qA1 - ECOD Domain | ECOD

ECOD/Domains/e8a1qA1

e8a1qA1

UID: 002979108

PDB

Range: A:221-277
PDB: 8A1Q chain A(all domains)

Molecule: Integrase

3D Structure

Loading viewer...

Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

PirmitegravirWBV
drugDrugBank DB18974

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 8A1Q RCSB PDB: 8A1Q PDBe: 8A1Q

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure