ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8a1qC1 - ECOD Domain | ECOD

ECOD/Domains/e8a1qC1

e8a1qC1

UID: 002979110

PDB

Range: C:222-279
PDB: 8A1Q chain C(all domains)

Molecule: Integrase

3D Structure

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Related Domains

Browse other domains in IN_DBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupSH3(4.1)

TT-groupSH3(4.1.1)

FFamilyIN_DBD_C(4.1.1.8)

Ligands

in contact, ≤ 4 Å

PirmitegravirWBV
drugDrugBank DB18974

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00552IN_DBD_C

Integrase DNA binding domain

ClanCL0010SH3

External Links

ECOD PDB View: 8A1Q RCSB PDB: 8A1Q PDBe: 8A1Q

Downloads

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