ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8amvD2 - ECOD Domain | ECOD

ECOD/Domains/e8amvD2

e8amvD2

UID: 002981343

PDB

Range: D:5-37,D:57-133
PDB: 8AMV chain D(all domains)

Molecule: Replication protein RepB

3D Structure

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Related Domains

Browse other domains in Rep_OBD →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupOrigin of replication-binding domains(304.55)

TT-groupOrigin of replication-binding domains(304.55.1)

FFamilyRep_OBD(304.55.1.3)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Phosphate ion)

Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01719Rep_OBD

Plasmid replication protein, origin binding domain

ClanCL0169Rep

External Links

ECOD PDB View: 8AMV RCSB PDB: 8AMV PDBe: 8AMV

Downloads

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