ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8at5A1 - ECOD Domain | ECOD

ECOD/Domains/e8at5A1

e8at5A1

UID: 002982020

PDB

Range: A:1-283
PDB: 8AT5 chain A(all domains)

Molecule: Capsid protein VP1

3D Structure

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Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

Myristic acidMYR
drugDrugBank DB08231
Palmitic AcidPLM
drugDrugBank DB03796

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 8AT5 RCSB PDB: 8AT5 PDBe: 8AT5

Downloads

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