ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ay0C1 - ECOD Domain | ECOD

ECOD/Domains/e8ay0C1

e8ay0C1

UID: 002982367

PDB

Range: C:21-54,C:174-273,C:493-520
PDB: 8AY0 chain C(all domains)

Molecule: Dipeptide-binding protein DppE

3D Structure

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Related Domains

Browse other domains in SBP_bac_5 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_5(7523.1.1.3)

Ligands

in contact, ≤ 4 Å

L-ala-gamma-d-glu-meso-diaminopimelic acidMHI

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00496SBP_bac_5

Bacterial extracellular solute-binding proteins, family 5 Middle

ClanCL0177PBP

External Links

ECOD PDB View: 8AY0 RCSB PDB: 8AY0 PDBe: 8AY0

Downloads

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