ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8ayyC1 - ECOD Domain | ECOD

ECOD/Domains/e8ayyC1

e8ayyC1

UID: 002982483

PDB

Range: C:1-237
PDB: 8AYY chain C(all domains)

Molecule: Capsid protein, VP3

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rhv →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv(10.2.1.1)

Ligands

in contact, ≤ 4 Å

GlutathioneGSH
drugDrugBank DB00143
PleconarilW11
drugDrugBank DB05105

Shown in the structure viewer.

Pfam Families

picornavirus capsid protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 8AYY RCSB PDB: 8AYY PDBe: 8AYY

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Drug annotations from DrugDomain.