ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bdnL2 - ECOD Domain | ECOD

ECOD/Domains/e8bdnL2

e8bdnL2

UID: 002983524

PDB

Range: L:155-204
PDB: 8BDN chain L(all domains)

Molecule: von Hippel-Lindau disease tumor suppressor

3D Structure

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Related Domains

Browse other domains in VHL_C →

Classification

AArchitecturealpha arrays(a.6)

XX-groupSOCS box-like(4215)

HH-groupSOCS box-like(4215.1)

TT-groupSOCS box-like(4215.1.1)

FFamilyVHL_C(4215.1.1.2)

Ligands

in contact, ≤ 4 Å

(2~{R})-3-methyl-1-[(2~{S},4~{R})-2-[(5~{R})-5-methyl-5-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]-4~{H}-1,2,4-oxadiazol-3-yl]-4-oxidanyl-pyrrolidin-1-yl]-2-(3-methyl-1,2-oxazol-5-yl)butan-1-oneQFR

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

VHL box domain

ClanCL0642SOCS_box

External Links

ECOD PDB View: 8BDN RCSB PDB: 8BDN PDBe: 8BDN

Downloads

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