ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8c6dA1 - ECOD Domain | ECOD

ECOD/Domains/e8c6dA1

e8c6dA1

UID: 002984540

PDB

Range: A:58-297
PDB: 8C6D chain A(all domains)

Molecule: Genome polyprotein

3D Structure

Loading viewer...

Related Domains

Browse other domains in Rhv_5 →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2)

TT-groupNucleoplasmin-like/VP (viral coat and capsid proteins)(10.2.1)

FFamilyRhv_5(10.2.1.69)

Ligands

in contact, ≤ 4 Å

SphingosineSQS
drugDrugBank DB03203

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Picornavirus coat protein

ClanCL0055Nucleoplasmin

External Links

ECOD PDB View: 8C6D RCSB PDB: 8C6D PDBe: 8C6D

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure