ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1o4zD1 - ECOD Domain | ECOD

ECOD/Domains/e1o4zD1

e1o4zD1

UID: 000029880

PDB

Range: D:58-353
PDB: 1O4Z chain D(all domains)
UniProt: Q9RGX8 (all domains)
Gene: agaB

Molecule: beta-agarase B

3D Structure

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Related Domains

Browse other domains in GH16_PorA-D →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyGH16_PorA-D(10.1.1.74)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF30275GH16_PorA-D

Beta-porphyranase A-D, GH16 domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 1O4Z RCSB PDB: 1O4Z PDBe: 1O4Z UniProt: Q9RGX8

Downloads

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