ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1o4zA1 - ECOD Domain | ECOD

ECOD/Domains/e1o4zA1

e1o4zA1

UID: 000029881

PDB

Range: A:59-353
PDB: 1O4Z chain A(all domains)
UniProt: Q9RGX8 (all domains)
Gene: agaB

Molecule: beta-agarase B

3D Structure

Loading viewer...

Related Domains

Browse other domains in GH16_PorA-D →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilyGH16_PorA-D(10.1.1.74)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF30275GH16_PorA-D

Beta-porphyranase A-D, GH16 domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 1O4Z RCSB PDB: 1O4Z PDBe: 1O4Z UniProt: Q9RGX8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure