ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8egwA1 - ECOD Domain | ECOD

ECOD/Domains/e8egwA1

e8egwA1

UID: 002989732

PDB

Range: A:249-356
PDB: 8EGW chain A(all domains)

Molecule: Protocadherin-16

3D Structure

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Related Domains

Browse other domains in Cadherin →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupImmunoglobulin-like beta-sandwich(11)

HH-groupImmunoglobulin-related(11.1)

TT-groupImmunoglobulin/Fibronectin type III/E set domains/PapD-like(11.1.1)

FFamilyCadherin(11.1.1.1)

Ligands

in contact, ≤ 4 Å

N-AcetylglucosamineNAG
drugDrugBank DB00141within 5 Å only
Calcium ionCA
metal

+ 2 additives (Cacodylate ion, 1,2-ETHANEDIOL)

Pfam Families

PF00028Cadherin

Cadherin domain

ClanCL0159E-set

External Links

ECOD PDB View: 8EGW RCSB PDB: 8EGW PDBe: 8EGW

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Cacodylate ionCAC
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.