ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8eyzB2 - ECOD Domain | ECOD

ECOD/Domains/e8eyzB2

e8eyzB2

UID: 002991579

PDB

Range: B:3-87,B:184-223
PDB: 8EYZ chain B(all domains)

Molecule: Amino acid ABC transporter substrate-binding protein

3D Structure

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Related Domains

Browse other domains in SBP_bac_3 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilySBP_bac_3(7523.1.1.4)

Ligands

in contact, ≤ 4 Å

L-GlutamineGLN
drugDrugBank DB00130
AZIDOBIS (DIMETHYLGLYOXIMATO) PYRIDINECOBALTX5Z

+ 2 additives (Sulfate ion, Glycerin)

Sulfate ion

Pfam Families

PF00497SBP_bac_3

Bacterial extracellular solute-binding proteins, family 3

ClanCL0177PBP

External Links

ECOD PDB View: 8EYZ RCSB PDB: 8EYZ PDBe: 8EYZ

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB14546

GlycerinGOL

DrugBank DB09462within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.