ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8f8oB1 - ECOD Domain | ECOD

ECOD/Domains/e8f8oB1

e8f8oB1

UID: 002992190

PDB

Range: B:181-293
PDB: 8F8O chain B(all domains)

Molecule: Succinyl-diaminopimelate desuccinylase

3D Structure

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Related Domains

Browse other domains in M20_dimer →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupBacterial exopeptidase dimerisation domain(304.25)

TT-groupBacterial exopeptidase dimerisation domain(304.25.1)

FFamilyM20_dimer(304.25.1.1)

Ligands

in contact, ≤ 4 Å

L-Lactic acid2OP
drugDrugBank DB14475
Succinic acidSIN
drugDrugBank DB00139
Zinc ion

Pfam Families

PF07687M20_dimer

Peptidase dimerisation domain

External Links

ECOD PDB View: 8F8O RCSB PDB: 8F8O PDBe: 8F8O

Downloads

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metalwithin 5 Å only

+ 2 additives (Citric acid, Tetraethylene glycol)

Citric acidCIT
DrugBank DB04272
Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.