ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2db3C1 - ECOD Domain | ECOD

ECOD/Domains/e2db3C1

e2db3C1

UID: 000299241

PDB

Range: C:202-226,C:460-621
PDB: 2DB3 chain C(all domains)
UniProt: P09052 (all domains)
Gene: vas

Molecule: ATP-dependent RNA helicase vasa

3D Structure

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Related Domains

Browse other domains in Helicase_C →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyHelicase_C(2004.1.1.30)

Ligands

in contact, ≤ 4 Å

Phosphoaminophosphonic acid-adenylate esterANP
Magnesium ionMG
metalwithin 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00271Helicase_C

Helicase conserved C-terminal domain

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 2DB3 RCSB PDB: 2DB3 PDBe: 2DB3 UniProt: P09052

Downloads

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