ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7uioBD1 - ECOD Domain | ECOD

ECOD/Domains/e7uioBD1

e7uioBD1

UID: 003004387

PDB

Range: BD:24-71,BD:131-221
PDB: 7UIO chain BD(all domains)

Molecule: DNA-directed RNA polymerase II subunit RPB4

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb4 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupHhH/H2TH(102)

HH-groupSAM/DNA-glycosylase(102.1)

TT-groupSAM domain-like(102.1.1)

FFamilyRNA_pol_Rpb4(102.1.1.11)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160within 5 Å only
Aspartic acidASP
drugDrugBank DB00128within 5 Å only

Pfam Families

PF03874RNA_pol_Rpb4

RNA polymerase Rpb4

ClanCL0426HRDC-like

External Links

ECOD PDB View: 7UIO RCSB PDB: 7UIO PDBe: 7UIO

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.