ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7uioAH1 - ECOD Domain | ECOD

ECOD/Domains/e7uioAH1

e7uioAH1

UID: 003004398

PDB

Range: AH:1-146
PDB: 7UIO chain AH(all domains)

Molecule: DNA-directed RNA polymerases I, II, and III subunit RPABC3

3D Structure

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Related Domains

Browse other domains in RNA_pol_Rpb8 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupOB-fold(2)

HH-groupNucleic acid-binding protein(2.1)

TT-groupNucleic acid-binding protein(2.1.1)

FFamilyRNA_pol_Rpb8(2.1.1.27)

Ligands

in contact, ≤ 4 Å

AlanineALA
drugDrugBank DB00160within 5 Å only
Aspartic acidASP
drugDrugBank DB00128within 5 Å only

Pfam Families

PF03870RNA_pol_Rpb8

RNA polymerase Rpb8

ClanCL0021OB

External Links

ECOD PDB View: 7UIO RCSB PDB: 7UIO PDBe: 7UIO

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

ThreonineTHR

drugDrugBank DB00156within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.