ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7widB1 - ECOD Domain | ECOD

ECOD/Domains/e7widB1

e7widB1

UID: 003008742

PDB

Range: B:3-192
PDB: 7WID chain B(all domains)

Molecule: ATP-dependent Clp protease proteolytic subunit

3D Structure

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Related Domains

Browse other domains in CLP_protease →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupClpP/crotonase(2486)

HH-groupClpP/crotonase(2486.1)

TT-groupClpP/crotonase(2486.1.1)

FFamilyCLP_protease(2486.1.1.2)

Ligands

in contact, ≤ 4 Å

(6S,9aS)-6-[(2S)-butan-2-yl]-8-(naphthalen-1-ylmethyl)-4,7-bis(oxidanylidene)-N-[4,4,4-tris(fluoranyl)butyl]-3,6,9,9a-tetrahydro-2H-pyrazino[1,2-a]pyrimidine-1-carboxamide9DF
Magnesium ionMG
metal

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF00574CLP_protease

Clp protease

ClanCL0127ClpP_crotonase

External Links

ECOD PDB View: 7WID RCSB PDB: 7WID PDBe: 7WID

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.