ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7y7aAm1 - ECOD Domain | ECOD

ECOD/Domains/e7y7aAm1

e7y7aAm1

UID: 003014870

PDB

Range: Am:11-344
PDB: 7Y7A chain Am(all domains)

Molecule: Photosystem II protein D1

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
Chlorophyll ACLA
drugDrugBank DB02133
Digalactosyl Diacyl Glycerol (Dgdg)

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 7Y7A RCSB PDB: 7Y7A PDBe: 7Y7A

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drugDrugBank DB03426

1,2-Dipalmitoyl-Phosphatidyl-GlyceroleLHG

drugDrugBank DB02043

Chloride ionCL

FE (III) IONFE

metal

1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDELMG

CA-MN4-O5 CLUSTEROEX

Pheophytin aPHO

2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEPL9

+ 2 additives (Glycerin, Bicarbonate ion)

GlycerinGOL
DrugBank DB09462within 5 Å only
Bicarbonate ionBCT

Shown in the structure viewer. Drug annotations from DrugDomain.