ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7yzmB1 - ECOD Domain | ECOD

ECOD/Domains/e7yzmB1

e7yzmB1

UID: 003016377

PDB

Range: B:1-207
PDB: 7YZM chain B(all domains)

Molecule: Dehydratase family protein

3D Structure

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Related Domains

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Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupFlavodoxin-like(2007)

HH-groupClass I glutamine amidotransferase-like(2007.1)

TT-groupChelatase-like(2007.1.14)

FFamilyHGD-D(2007.1.14.7)

Ligands

in contact, ≤ 4 Å

Tris(Hydroxyethyl)AminomethaneTAM
drugDrugBank DB04237
Double cubane clusterBJ8
Iron/sulfur clusterSF4

Pfam Families

2-hydroxyglutaryl-CoA dehydratase, D-component

ClanCL0108Actin_ATPase

External Links

ECOD PDB View: 7YZM RCSB PDB: 7YZM PDBe: 7YZM

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

within 5 Å only

+ 3 additives (Sulfate ion, (R,R)-2,3-BUTANEDIOL, Ammonium ion)

Sulfate ionSO4
DrugBank DB14546
(R,R)-2,3-BUTANEDIOLBU3
Ammonium ionNH4

Shown in the structure viewer. Drug annotations from DrugDomain.