ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2h88B1 - ECOD Domain | ECOD

ECOD/Domains/e2h88B1

e2h88B1

UID: 000301679

PDB

Range: B:115-246
PDB: 2H88 chain B(all domains)
UniProt: Q9YHT2 (all domains)
Gene: SDHB

Molecule: Succinate dehydrogenase Ip subunit

3D Structure

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Related Domains

Browse other domains in Fer4_17 →

Classification

AArchitecturealpha arrays(a.6)

XX-groupalpha-helical ferredoxin-like(187)

HH-groupalpha-helical ferredoxin(187.1)

TT-groupalpha-helical ferredoxin(187.1.1)

FFamilyFer4_17(187.1.1.4)

Ligands

in contact, ≤ 4 Å

2-Hexyloxy-6-Hydroxymethyl-Tetrahydro-Pyran-3,4,5-TriolBHG
drugDrugBank DB04141
FerrohemeHEM
drugDrugBank DB18267

Pfam Families

PF13534Fer4_17

4Fe-4S dicluster domain

ClanCL03444Fe-4S

External Links

ECOD PDB View: 2H88 RCSB PDB: 2H88 PDBe: 2H88 UniProt: Q9YHT2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

FE3-S4 CLUSTERF3S

Potassium ionK

metal

Iron/sulfur clusterSF4

Unknown ligandUNL

FE2/S2 (INORGANIC) CLUSTERFES

within 5 Å only

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.