ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7z9gB1 - ECOD Domain | ECOD

ECOD/Domains/e7z9gB1

e7z9gB1

UID: 003016840

PDB

Range: B:533-562,B:732-740
PDB: 7Z9G chain B(all domains)

Molecule: DNA gyrase subunit B

3D Structure

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Related Domains

Browse other domains in GyrB_hook →

Classification

AArchitecturea+b two layers(a.11)

XX-groupSSHS domain(4012)

HH-groupSSHS domain in type II DNA topoisomerase(4012.1)

TT-groupSSHS domain in type II DNA topoisomerase(4012.1.1)

FFamilyGyrB_hook(4012.1.1.4)

Ligands

in contact, ≤ 4 Å

4-[[3-(2-azanylethoxy)-2-oxidanyl-4-[[5-[[(2~{S})-2-[[4-[(6-oxidanylnaphthalen-2-yl)carbonylamino]phenyl]carbonylamino]-3-(1~{H}-1,2,3-triazol-4-yl)propanoyl]amino]pyridin-2-yl]carbonylamino]phenyl]carbonylamino]-3-methoxy-2-oxidanyl-benzoic acidIM0
Magnesium ionMG
metalwithin 5 Å only

Pfam Families

PF21249GyrB_hook

GyrB, hook

External Links

ECOD PDB View: 7Z9G RCSB PDB: 7Z9G PDBe: 7Z9G

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.