ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8d2vA2 - ECOD Domain | ECOD

ECOD/Domains/e8d2vA2

e8d2vA2

UID: 003027103

PDB

Range: A:271-507
PDB: 8D2V chain A(all domains)

Molecule: Sodium-dependent lysophosphatidylcholine symporter 1-B

3D Structure

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Related Domains

Browse other domains in MFS_2 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupMajor facilitator superfamily (MFS) general substrate transporter(5050)

HH-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1)

TT-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1.1)

FFamilyMFS_2(5050.1.1.10)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
[(2~{R})-2-oxidanyl-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-propyl] (9~{Z},12~{Z},15~{Z})-octadeca-9,12,15-trienoateZGS

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Pfam Families

MFS/sugar transport protein

ClanCL0015MFS

External Links

ECOD PDB View: 8D2V RCSB PDB: 8D2V PDBe: 8D2V

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.