ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8g6pA3 - ECOD Domain | ECOD

ECOD/Domains/e8g6pA3

e8g6pA3

UID: 003031753

PDB

Range: A:-1-114
PDB: 8G6P chain A(all domains)

Molecule: UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase

3D Structure

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Related Domains

Browse other domains in Mur_ligase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupMurF and HprK N-domain-like(2493)

HH-groupMurF and HprK N-domain-like(2493.1)

TT-groupMurF and HprK N-domain-like(2493.1.1)

FFamilyMur_ligase(2493.1.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF01225Mur_ligase

Mur ligase family, catalytic domain

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 8G6P RCSB PDB: 8G6P PDBe: 8G6P

Downloads

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