ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8i2mB1 - ECOD Domain | ECOD

ECOD/Domains/e8i2mB1

e8i2mB1

UID: 003033704

PDB

Range: B:2-334
PDB: 8I2M chain B(all domains)

Molecule: Tryptophan--tRNA ligase

3D Structure

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Related Domains

Browse other domains in tRNA-synt_1b →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHUP domain-like(2005)

HH-groupHUP domains(2005.1)

TT-groupHUP domains(2005.1.1)

FFamilytRNA-synt_1b(2005.1.1.2)

Ligands

in contact, ≤ 4 Å

Tryptophanyl-5'ampTYM
drugDrugBank DB01831

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer.

Pfam Families

PF00579tRNA-synt_1b

tRNA synthetases class I (W and Y)

ClanCL0039HUP

External Links

ECOD PDB View: 8I2M RCSB PDB: 8I2M PDBe: 8I2M

Downloads

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Drug annotations from DrugDomain.