ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7yffB5 - ECOD Domain | ECOD

ECOD/Domains/e7yffB5

e7yffB5

UID: 003039469

PDB

Range: B:425-555,B:789-847
PDB: 7YFF chain B(all domains)

Molecule: Glutamate receptor ionotropic, NMDA 2D

3D Structure

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Related Domains

Browse other domains in Lig_chan-Glu_bd →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPeriplasmic binding protein-like II(7523)

HH-groupPeriplasmic binding protein-like II(7523.1)

TT-groupPeriplasmic binding protein-like II(7523.1.1)

FFamilyLig_chan-Glu_bd(7523.1.1.20)

Ligands

in contact, ≤ 4 Å

(2R)-4-(3-phosphonopropyl)piperazine-2-carboxylic acid7RC

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF10613Lig_chan-Glu_bd

Ligated ion channel L-glutamate- and glycine-binding site

ClanCL0177PBP

External Links

ECOD PDB View: 7YFF RCSB PDB: 7YFF PDBe: 7YFF

Downloads

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