ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gfpA1 - ECOD Domain | ECOD

ECOD/Domains/e8gfpA1

e8gfpA1

UID: 003041592

PDB

Range: A:366-533
PDB: 8GFP chain A(all domains)

Molecule: Lytic transglycosylase domain-containing protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilySLT(235.1.1.9)

Ligands

in contact, ≤ 4 Å

2-deoxy-2,3-dehydro-N-acetylneuraminic acidDAN
drugDrugBank DB03991

+ 1 additive (Pentaethylene glycol)

Pentaethylene glycol1PE

Shown in the structure viewer. Drug annotations from .

Pfam Families

Transglycosylase SLT domain

ClanCL0037Lysozyme

External Links

ECOD PDB View: 8GFP RCSB PDB: 8GFP PDBe: 8GFP

Downloads

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