ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cbsD1 - ECOD Domain | ECOD

ECOD/Domains/e8cbsD1

e8cbsD1

UID: 003056010

PDB

Range: D:56-211
PDB: 8CBS chain D(all domains)

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(2~{S})-2-[3-cyclopropyl-6-methyl-2-(5-methyl-3,4-dihydro-2~{H}-chromen-6-yl)phenyl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acidU5L

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 8CBS RCSB PDB: 8CBS PDBe: 8CBS

Downloads

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