ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8dmlB1 - ECOD Domain | ECOD

ECOD/Domains/e8dmlB1

e8dmlB1

UID: 003056438

PDB

Range: B:29-161
PDB: 8DML chain B(all domains)

Molecule: VtrC

3D Structure

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Related Domains

Browse other domains in VtrC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupLipocalins/Streptavidin(9)

HH-groupLipocalins(9.1)

TT-groupLipocalins(9.1.1)

FFamilyVtrC(9.1.1.31)

Ligands

in contact, ≤ 4 Å

Chenodeoxycholic acidJN3
drugDrugBank DB06777
Calcium ionCA
metal

+ 2 additives (1,2-ETHANEDIOL, Tetraethylene glycol)

Pfam Families

VtrC lipocalin-like domain

ClanCL0116Calycin

External Links

ECOD PDB View: 8DML RCSB PDB: 8DML PDBe: 8DML

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.