ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8ij9A1 - ECOD Domain | ECOD

ECOD/Domains/e8ij9A1

e8ij9A1

UID: 003056598

PDB

Range: A:8-175
PDB: 8IJ9 chain A(all domains)

Molecule: Ras-related protein Rab-6B

3D Structure

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Related Domains

Browse other domains in Ras →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupP-loop domains-like(2004)

HH-groupP-loop domains-related(2004.1)

TT-groupP-loop containing nucleoside triphosphate hydrolases(2004.1.1)

FFamilyRas(2004.1.1.19)

Ligands

in contact, ≤ 4 Å

Guanosine-5'-TriphosphateGTP
drugDrugBank DB04137
Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Ras family

ClanCL0023P-loop_NTPase

External Links

ECOD PDB View: 8IJ9 RCSB PDB: 8IJ9 PDBe: 8IJ9

Downloads

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