ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7yw2A2 - ECOD Domain | ECOD

ECOD/Domains/e7yw2A2

e7yw2A2

UID: 003059041

PDB

Range: A:110-224
PDB: 7YW2 chain A(all domains)

Molecule: tRNA 2'-phosphotransferase 1

3D Structure

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Related Domains

Browse other domains in PTS_2-RNA →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupADP-ribosylation(237)

HH-groupADP-ribosylation(237.1)

TT-groupADP-ribosylation(237.1.1)

FFamilyPTS_2-RNA(237.1.1.4)

Ligands

in contact, ≤ 4 Å

GlycineGLY
drugDrugBank DB00145
[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphateHQG

Pfam Families

PF01885PTS_2-RNA

RNA 2'-phosphotransferase, Tpt1 / KptA family

ClanCL0084ADP-ribosyl

External Links

ECOD PDB View: 7YW2 RCSB PDB: 7YW2 PDBe: 7YW2

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

sorbitolSOR

+ 3 additives (HEPES, Glycerin, Phosphate ion)

HEPESEPE
DrugBank DB16872
GlycerinGOL
DrugBank DB09462
Phosphate ionPO4
DrugBank DB14523

Shown in the structure viewer. Drug annotations from DrugDomain.