ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e7ym5A1 - ECOD Domain | ECOD

ECOD/Domains/e7ym5A1

e7ym5A1

UID: 003059403

PDB

Range: A:28-333
PDB: 7YM5 chain A(all domains)

Molecule: Type III secretion system effector arginine glycosyltransferase SseK1

3D Structure

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Related Domains

Browse other domains in SseK_NleB →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupNucleotide-diphospho-sugar transferases(7516)

HH-groupNucleotide-diphospho-sugar transferases(7516.1)

TT-groupNucleotide-diphospho-sugar transferases(7516.1.1)

FFamilySseK_NleB(7516.1.1.90)

Ligands

in contact, ≤ 4 Å

Uridine-5'-DiphosphateUDP
drugDrugBank DB03435
MANGANESE (II) IONMN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF24688SseK_NleB

SseK/NleB family

ClanCL0110GT-A

External Links

ECOD PDB View: 7YM5 RCSB PDB: 7YM5 PDBe: 7YM5

Downloads

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