ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8q5iAP1 - ECOD Domain | ECOD

ECOD/Domains/e8q5iAP1

e8q5iAP1

UID: 003062268

PDB

Range: AP:2-104
PDB: 8Q5I chain AP(all domains)

Molecule: 60S ribosomal protein L42-B

3D Structure

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Related Domains

Browse other domains in Ribosomal_L44 →

Classification

AArchitecturefew secondary structure elements(a.19)

XX-groupRubredoxin-like(375)

HH-groupRubredoxin-related(375.1)

TT-groupRubredoxin-related(375.1.1)

FFamilyRibosomal_L44(375.1.1.5)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
Zinc ionZN
metal
SPERMINE (FULLY PROTONATED FORM)SPK

Pfam Families

PF00935Ribosomal_L44

Ribosomal protein L44

ClanCL0167Zn_Beta_Ribbon

External Links

ECOD PDB View: 8Q5I RCSB PDB: 8Q5I PDBe: 8Q5I

Downloads

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within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.