ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2i5bC1 - ECOD Domain | ECOD

ECOD/Domains/e2i5bC1

e2i5bC1

UID: 000306238

PDB

Range: C:3-267
PDB: 2I5B chain C(all domains)
UniProt: P39610 (all domains)
Gene: pdxK

Molecule: Phosphomethylpyrimidine kinase

3D Structure

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Related Domains

Browse other domains in Phos_pyr_kin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRibokinase-like(2003.6)

TT-groupRibokinase-like(2003.6.1)

FFamilyPhos_pyr_kin(2003.6.1.5)

Ligands

in contact, ≤ 4 Å

Adenosine disphosphateADP
drugDrugBank DB16833

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF08543Phos_pyr_kin

Phosphomethylpyrimidine kinase

ClanCL0118Ribokinase

External Links

ECOD PDB View: 2I5B RCSB PDB: 2I5B PDBe: 2I5B UniProt: P39610

Downloads

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