ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gfbA1 - ECOD Domain | ECOD

ECOD/Domains/e8gfbA1

e8gfbA1

UID: 003066428

PDB

Range: A:366-533
PDB: 8GFB chain A(all domains)

Molecule: Lytic transglycosylase domain-containing protein

3D Structure

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Related Domains

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Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilySLT(235.1.1.9)

Ligands

in contact, ≤ 4 Å

[(2S)-1,4-dioxan-2-yl]methyl 2-acetamido-2-deoxy-6-O-methyl-beta-D-glucopyranosideZG9

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Transglycosylase SLT domain

ClanCL0037Lysozyme

External Links

ECOD PDB View: 8GFB RCSB PDB: 8GFB PDBe: 8GFB

Downloads

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