ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e8gfgA1 - ECOD Domain | ECOD

ECOD/Domains/e8gfgA1

e8gfgA1

UID: 003066438

PDB

Range: A:366-533
PDB: 8GFG chain A(all domains)

Molecule: Lytic transglycosylase domain-containing protein

3D Structure

Loading viewer...

Related Domains

Browse other domains in SLT →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilySLT(235.1.1.9)

Ligands

in contact, ≤ 4 Å

(3S,3aR,5S,6S,6aS)-2-oxohexahydro-2H-3,5-methanocyclopenta[b]furan-6-yl 2-acetamido-2-deoxy-beta-D-glucopyranosideZHL

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Transglycosylase SLT domain

ClanCL0037Lysozyme

External Links

ECOD PDB View: 8GFG RCSB PDB: 8GFG PDBe: 8GFG

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure