ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8gfqA2 - ECOD Domain | ECOD

ECOD/Domains/e8gfqA2

e8gfqA2

UID: 003066451

PDB

Range: A:366-533
PDB: 8GFQ chain A(all domains)

Molecule: Lytic transglycosylase domain-containing protein

3D Structure

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Related Domains

Browse other domains in SLT →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilySLT(235.1.1.9)

Ligands

in contact, ≤ 4 Å

9-Amino-2-deoxy-2,3-dehydro-n-acetyl-neuraminic acid9AM
drugDrugBank DB04227

+ 2 additives (Dimethyl sulfoxide, Triethylene glycol)

Dimethyl sulfoxideDMS
DrugBank DB01093

Pfam Families

Transglycosylase SLT domain

ClanCL0037Lysozyme

External Links

ECOD PDB View: 8GFQ RCSB PDB: 8GFQ PDBe: 8GFQ

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Triethylene glycolPGE

DrugBank DB02327

Shown in the structure viewer. Drug annotations from DrugDomain.