ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8j79B1 - ECOD Domain | ECOD

ECOD/Domains/e8j79B1

e8j79B1

UID: 003066498

PDB

Range: B:693-954
PDB: 8J79 chain B(all domains)

Molecule: Xanthine dehydrogenase/oxidase

3D Structure

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Related Domains

Browse other domains in MoCoBD_1 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupMocoBD/DmpA-related(231)

HH-groupMocoBD/DmpA-related(231.1)

TT-groupMolybdenum cofactor-binding domain(231.1.1)

FFamilyMoCoBD_1(231.1.1.1)

Ligands

in contact, ≤ 4 Å

Oxypurinol141
drugDrugBank DB05262
Dioxo(sulfanyl)molybdenumMOS
drugDrugBank DB03328
Calcium ion

Pfam Families

PF02738MoCoBD_1

Molybdopterin cofactor-binding domain

ClanCL0635DmpA_ArgJ

External Links

ECOD PDB View: 8J79 RCSB PDB: 8J79 PDBe: 8J79

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

FE2/S2 (INORGANIC) CLUSTERFES

PHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7,8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTERMTE

+ 2 additives (Carbonate ion, Glycerol)

Carbonate ionCO3
DrugBank DB14531
GlycerolGOL

Shown in the structure viewer. Drug annotations from DrugDomain.