ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8a4dF2 - ECOD Domain | ECOD

ECOD/Domains/e8a4dF2

e8a4dF2

UID: 003066893

PDB

Range: F:32-217,F:241-293,F:295-318
PDB: 8A4D chain F(all domains)

Molecule: 1-deoxy-D-xylulose-5-phosphate synthase

3D Structure

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Related Domains

Browse other domains in DXP_synthase_N →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupThiamin diphosphate-binding fold (THDP-binding)(7574)

HH-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1)

TT-groupThiamin diphosphate-binding fold (THDP-binding)(7574.1.1)

FFamilyDXP_synthase_N(7574.1.1.11)

Ligands

in contact, ≤ 4 Å

2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]phenyl}ethanol26G
Magnesium ionMG
metal
Sodium ionNA
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF13292DXP_synthase_N

1-deoxy-D-xylulose-5-phosphate synthase

ClanCL0254THDP-binding

External Links

ECOD PDB View: 8A4D RCSB PDB: 8A4D PDBe: 8A4D

Downloads

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