ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8acyB1 - ECOD Domain | ECOD

ECOD/Domains/e8acyB1

e8acyB1

UID: 003067110

RepresentativePDB

Range: B:35-414
PDB: 8ACY chain B(all domains)

Molecule: Na(+)-translocating NADH-quinone reductase subunit B

3D Structure

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Related Domains

Browse other domains in NQR2_RnfD_RnfE →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupAmmonium transporter-related(5049)

HH-groupAmmonium transporter-related(5049.1)

TT-groupNa(+)-translocating NADH-quinone reductase subunit B(5049.1.3)

FFamilyNQR2_RnfD_RnfE(5049.1.3.1)

Ligands

in contact, ≤ 4 Å

Flavin mononucleotideFMN
drugDrugBank DB03247
RiboflavinRBF
drugDrugBank DB00140
Sodium ion

Pfam Families

PF03116NQR2_RnfD_RnfE

NQR2, RnfD, RnfE family

External Links

ECOD PDB View: 8ACY RCSB PDB: 8ACY PDBe: 8ACY

Downloads

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metal

+ 1 additive (Dodecyl-beta-d-maltoside)

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer. Drug annotations from DrugDomain.