ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8b1aA1 - ECOD Domain | ECOD

ECOD/Domains/e8b1aA1

e8b1aA1

UID: 003067730

PDB

Range: A:233-484
PDB: 8B1A chain A(all domains)

Molecule: Dipeptide and tripeptide permease B

3D Structure

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Related Domains

Browse other domains in PTR2 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupMajor facilitator superfamily (MFS) general substrate transporter(5050)

HH-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1)

TT-groupMajor facilitator superfamily (MFS) general substrate transporter(5050.1.1)

FFamilyPTR2(5050.1.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 4 additives (Glycerin, Pentaethylene glycol, Dodecyl-beta-d-maltoside, …)

GlycerinGOL
DrugBank DB09462
Pentaethylene glycol1PE
Dodecyl-beta-d-maltosideLMT

Pfam Families

POT family

ClanCL0015MFS

External Links

ECOD PDB View: 8B1A RCSB PDB: 8B1A PDBe: 8B1A

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Tetraethylene glycolPG4

Shown in the structure viewer. Drug annotations from DrugDomain.