ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bdbC2 - ECOD Domain | ECOD

ECOD/Domains/e8bdbC2

e8bdbC2

UID: 003068477

PDB

Range: C:155-482
PDB: 8BDB chain C(all domains)

Molecule: Ribulose bisphosphate carboxylase large chain

3D Structure

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Related Domains

Browse other domains in RuBisCO_large →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyRuBisCO_large(2002.1.1.1)

Ligands

in contact, ≤ 4 Å

2-CARBOXYARABINITOL-1,5-DIPHOSPHATECAP
Magnesium ionMG
metal

+ 2 additives (Bicarbonate ion, 1,2-ETHANEDIOL)

Bicarbonate ionBCT

Pfam Families

PF00016RuBisCO_large

Ribulose bisphosphate carboxylase large chain, catalytic domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 8BDB RCSB PDB: 8BDB PDBe: 8BDB

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.