ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bdbG1 - ECOD Domain | ECOD

ECOD/Domains/e8bdbG1

e8bdbG1

UID: 003068478

PDB

Range: G:4-154
PDB: 8BDB chain G(all domains)

Molecule: Ribulose bisphosphate carboxylase large chain

3D Structure

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Related Domains

Browse other domains in RuBisCO_large_N →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupRuBisCO, large subunit, small (N-terminal) domain(304.10)

TT-groupRuBisCO, large subunit, small (N-terminal) domain(304.10.1)

FFamilyRuBisCO_large_N(304.10.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Bicarbonate ion, 1,2-ETHANEDIOL)

Bicarbonate ionBCT
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02788RuBisCO_large_N

Ribulose bisphosphate carboxylase large chain, N-terminal domain

External Links

ECOD PDB View: 8BDB RCSB PDB: 8BDB PDBe: 8BDB

Downloads

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