ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bdbF1 - ECOD Domain | ECOD

ECOD/Domains/e8bdbF1

e8bdbF1

UID: 003068485

PDB

Range: F:1-138
PDB: 8BDB chain F(all domains)

Molecule: Ribulose bisphosphate carboxylase small chain

3D Structure

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Related Domains

Browse other domains in RuBisCO_small →

Classification

AArchitecturea+b two layers(a.11)

XX-groupReverse ferredoxin(302)

HH-groupRuBisCO, small subunit(302.2)

TT-groupRuBisCO, small subunit(302.2.1)

FFamilyRuBisCO_small(302.2.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Bicarbonate ion, 1,2-ETHANEDIOL)

Bicarbonate ionBCT
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00101RuBisCO_small

Ribulose bisphosphate carboxylase, small chain

External Links

ECOD PDB View: 8BDB RCSB PDB: 8BDB PDBe: 8BDB

Downloads

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