ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bgwB2 - ECOD Domain | ECOD

ECOD/Domains/e8bgwB2

e8bgwB2

UID: 003068777

PDB

Range: B:1-217
PDB: 8BGW chain B(all domains)

Molecule: Nitric oxide reductase subunit B

3D Structure

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Related Domains

Browse other domains in NorB_cytochrome_c-like →

Classification

AArchitecturealpha arrays(a.6)

XX-groupCytochrome c-like(107)

HH-groupCytochrome c(107.1)

TT-groupCytochrome c(107.1.1)

FFamilyNorB_cytochrome_c-like(107.1.1.13)

Ligands

in contact, ≤ 4 Å

FerrohemeHEM
drugDrugBank DB18267
Calcium ionCA
metal
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE

Pfam Families

PF22085NorB_cytochrome_c-like

Nitric oxide reductase subunit B, cytochrome c-like domain

ClanCL0318Cytochrome-c

External Links

ECOD PDB View: 8BGW RCSB PDB: 8BGW PDBe: 8BGW

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

decyl 4-O-alpha-D-glucopyranosyl-1-thio-beta-D-glucopyranoside10M

within 5 Å only

Shown in the structure viewer. Drug annotations from DrugDomain.