ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8bpuAAA1 - ECOD Domain | ECOD

ECOD/Domains/e8bpuAAA1

e8bpuAAA1

UID: 003070339

PDB

Range: AAA:1-129
PDB: 8BPU chain AAA(all domains)

Molecule: Lysozyme

3D Structure

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Related Domains

Browse other domains in Lys →

Classification

AArchitecturea+b complex topology(a.14)

XX-groupLysozyme-like(235)

HH-groupLysozyme-like(235.1)

TT-groupLysozyme-like(235.1.1)

FFamilyLys(235.1.1.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
9,11-bis(4-fluorophenyl)-2,4,6,8-tetraoxa-9,11-diaza-1$l^{4},5$l^{4}-diruthenatricyclo[3.3.3.0^{1,5}]undecaneR2I
Ru2-(OH)6 clusterR2U

Pfam Families

C-type lysozyme/alpha-lactalbumin family

ClanCL0037Lysozyme

External Links

ECOD PDB View: 8BPU RCSB PDB: 8BPU PDBe: 8BPU

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (HEPES)

HEPESEPE
DrugBank DB16872

Shown in the structure viewer. Drug annotations from DrugDomain.