ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8c87H1 - ECOD Domain | ECOD

ECOD/Domains/e8c87H1

e8c87H1

UID: 003071432

PDB

Range: H:10-35
PDB: 8C87 chain H(all domains)

Molecule: Reaction center protein H chain

3D Structure

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Related Domains

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Classification

AArchitectureextended segments(a.20)

XX-groupPhotosystem II reaction centre subunit H, transmembrane region(5002)

HH-groupPhotosystem II reaction centre subunit H, transmembrane region(5002.1)

TT-groupPhotosystem II reaction centre subunit H, transmembrane region(5002.1.1)

FFamilyPRCH(5002.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
Unknown ligandUNL

+ 1 additive (Lauryl dimethylamine-n-oxide)

Lauryl dimethylamine-n-oxide

Pfam Families

Photosynthetic reaction centre, H-chain N-terminal region

ClanCL0350PRC-barrel

External Links

ECOD PDB View: 8C87 RCSB PDB: 8C87 PDBe: 8C87

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.