ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8cbrD1 - ECOD Domain | ECOD

ECOD/Domains/e8cbrD1

e8cbrD1

UID: 003071578

PDB

Range: D:57-211
PDB: 8CBR chain D(all domains)

Molecule: Integrase

3D Structure

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Related Domains

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Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupRibonuclease H-like(2484)

HH-groupRibonuclease H-like(2484.1)

TT-groupRibonuclease H-like(2484.1.1)

FFamilyrve(2484.1.1.9)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal
(2S)-2-[3-cyclopropyl-2-(3,4-dihydro-2H-chromen-6-yl)-6-methyl-phenyl]-2-[(2-methylpropan-2-yl)oxy]ethanoic acidRWR

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOL

Pfam Families

Integrase core domain

ClanCL0219RNase_H

External Links

ECOD PDB View: 8CBR RCSB PDB: 8CBR PDBe: 8CBR

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.